typic

Typic is a program that collects data from multiple sources and produces a ranking of the peptides of a protein to support the selection of proteotypic peptides. Proteotypic peptides are those peptides that uniquely identify a protein and are consistently identified when a sample with a protein mixture is analyzed in an LC/MS experiment.

The Typic manual has a description of the options for the program.

There's a long story about this software.

Uniprot IDs file: *
LC/MS data file:
Groups file:
Enzyme:	Trypsin Arg-C Chymotrypsin Glu-C DE Glu-C D Glu-C E Lys-C Trypsin KR
Include in-silico digestion:
SRM Atlas build:
Proteome:	or upload
Contaminants:	or upload
iRTs file:	or upload
Include all peptides:
Ranking colors:	Green-Yellow-Red Soft Green-Yellow-Red Blue-Magenta-Yellow
Your email: *

Uniprot IDs file: *
Peptides file: *
Evidence file:
Groups file:
Enzyme:	Trypsin Arg-C Chymotrypsin Glu-C DE Glu-C D Glu-C E Lys-C Trypsin KR
Include in-silico digestion:
SRM Atlas build:
Proteome:	or upload
Contaminants:	or upload
iRTs file:	or upload
Include all peptides:
Ranking colors:	Green-Yellow-Red Soft Green-Yellow-Red Blue-Magenta-Yellow
Your email: *